Zip_Column_Content

Quick Facts

Workflow Type	Applicable Kingdom	Last Known Changes	Command-line Compatibility	Workflow Level
Exporting Data From Terra	Any taxa	PHB v2.1.0	Yes	Set-level

Zip_Column_Content_PHB

This workflow will create a zip file that contains all of the items in a column in a Terra Table.

Inputs

This workflow runs on the set level.

Terra Task Name	Variable	Type	Description	Default Value	Terra Status
zip_column_content	files_to_zip	Array[File]	The column that has the files you want to zip.		Required
zip_column_content	zipped_file_name	String	The name you want your zipped file to have. The .zip file extension will be added to this name.		Required
zip_files	cpu	Int	Number of CPUs to allocate to the task	2	Optional
zip_files	disk_size	Int	Amount of storage (in GB) to allocate to the task	100	Optional
zip_files	docker_image	String	The Docker container to use for the task	"us-docker.pkg.dev/general-theiagen/theiagen/utility:1.1"	Optional
zip_files	memory	Int	Amount of memory/RAM (in GB) to allocate to the task	8	Optional
version_capture	docker	String	The Docker container to use for the task	"us-docker.pkg.dev/general-theiagen/theiagen/alpine-plus-bash:3.20.0"	Optional
version_capture	timezone	String	Set the time zone to get an accurate date of analysis (uses UTC by default)		Optional

Outputs

Info

Please note that if you run this workflow on the same Terra set (the same group of samples can be included in multiple Terra sets), the results will overwrite each other. We recommend either (1) renaming the output variable, or (2) creating a new set every time you run the workflow.

Variable	Type	Description
zipped_files	File	The zipped file containing all of the items from the column you selected.
zip_column_content_version	String	The version of the repository the workflow is hosted in
zip_column_content_analysis_date	String	The date the workflow was run