TheiaProk Outputs on Terra

When running tbp-parser as part of the TheiaProk workflow series (find documentation for TheiaProk here) on Terra.bio, you will find the following outputs in your data table.

TheiaProk Version

This information only corresponds to PHB v2.2.0. These inputs and outputs may not be applicable to other versions of TheiaProk.

Variable	Type	Description
tbp_parser_average_genome_depth	Float	The average depth of coverage across the H37Rv reference genome
tbp_parser_coverage_report	File	The coverage report generated by tbp-parser
tbp_parser_docker	String	The Docker image used to run tbp-parser
tbp_parser_genome_percent_coverage	Float	The percentage of the H37Rv reference genome that has depth above the threshold set by tbp_parser_min_depth
tbp_parser_laboratorian_report_csv	File	The laboratorian report generated by tbp-parser
tbp_parser_lims_report_csv	File	The LIMS report generated by tbp-parser
tbp_parser_looker_report_csv	File	The Looker report generated by tbp-parser
tbp_parser_version	String	The version of tbp-parser used in the analysis as determined by tbp-parser --version

Find the inputs for tbp-parser in TheiaProk on Terra here.